Zoe Rudnick

Johns Hopkins University School of Medicine

Zoe Rudnick is a second-year Ph.D. student in Biomedical Engineering at the Johns Hopkins University School of Medicine. Her research focuses on developing algorithms to analyze RNA-seq data, including long-read and single-cell datasets, to improve isoform-level quantification and transcript reconstruction.

Zoe's work addresses critical challenges in understanding gene expression at the transcript level, which has important implications for precision medicine and our understanding of complex biological systems. Outside of the lab, Zoe enjoys rock climbing, reading, and spending time with her cat.

Conference

CSHL Genome Informatics 2025

Research Focus

• RNA-seq data analysis
• Long-read sequencing
• Single-cell RNA sequencing
• Isoform-level quantification
• Transcript reconstruction
• Algorithm development
• Precision medicine